Dolphins have unique whistle-names for each other

July 23, 2013
Mother and juvenile bottlenose dolphins head t...

Mother and juvenile bottlenose dolphins – Wikipedia

Dolphins it seems are not just self-aware but identify specific individuals with specific whistles. And that would mean not just having a sense of self-identity but also of having a “naming” convention and of communication. And if whistle-names exist then whistle-words and language are also already present or certainly not very far away. Researchers from the Sea Mammal Research Unit, School of Biology at the University of St. Andrews have just published a study of bottle-nosed dolphins.

Stephanie L. King and Vincent M. Janik, Bottlenose dolphins can use learned vocal labels to address each other, Published online before print July 22, 2013, doi:10.1073/pnas.1304459110 , PNAS July 22, 2013

Abstract: In animal communication research, vocal labeling refers to incidents in which an animal consistently uses a specific acoustic signal when presented with a specific object or class of objects. Labeling with learned signals is a foundation of human language but is notably rare in nonhuman communication systems. In natural animal systems, labeling often occurs with signals that are not influenced by learning, such as in alarm and food calling. There is a suggestion, however, that some species use learned signals to label conspecific individuals in their own communication system when mimicking individually distinctive calls. Bottlenose dolphins (Tursiops truncatus) are a promising animal for exploration in this area because they are capable of vocal production learning and can learn to use arbitrary signals to report the presence or absence of objects. Bottlenose dolphins develop their own unique identity signal, the signature whistle. This whistle encodes individual identity independently of voice features. The copying of signature whistles may therefore allow animals to label or address one another. Here, we show that wild bottlenose dolphins respond to hearing a copy of their own signature whistle by calling back. Animals did not respond to whistles that were not their own signature. This study provides compelling evidence that a dolphin’s learned identity signal is used as a label when addressing conspecifics. Bottlenose dolphins therefore appear to be unique as nonhuman mammals to use learned signals as individually specific labels for different social companions in their own natural communication system.

Fractal Explorer

July 23, 2013

The ultimate fractal explorer!

This could well be the tool that Slartibartfast used to design the Norwegian fjords and is using for the African fjords he is designing for the alternate Earth!

From unwrong.com

fractal explorer

Click on the image to explore.

Slartibartfast is a venerable Magrathean planetary designer. He specialises in Fjords, having won an award for Norway.

He was woken from a five million year sleep by a final order for a duplicate Earth. Its premature demolition caused a terrible hooha, and a new copy was ordered from the original blueprints.

Slartibartfast on life:

Life on land four times older than previously thought

July 23, 2013

“Settled science” has had it that life on land dates from about 500 million years ago. But fossils of something rather simpler than plants or animals found in South Africa provide evidence that life on land could be 2.2 billion years old.

Gregory J. Retallack, Evelyn S. Krull, Glenn D. Thackray, Dula Parkinson. Problematic urn-shaped fossils from a Paleoproterozoic (2.2Ga) paleosol in South Africa. Precambrian Research, 2013; 235: 71

DOI:10.1016/j.precamres.2013.05.015

Science Daily: 

Conventional scientific wisdom has it that plants and other creatures have only lived on land for about 500 million years, and that landscapes of the early Earth were as barren as Mars.

A new study, led by geologist Gregory J. Retallack of the University of Oregon, now has presented evidence for life on land that is four times as old — at 2.2 billion years ago and almost half way back to the inception of the planet.

That evidence, which is detailed in the September issue of the journal Precambrian Research, involves fossils the size of match heads and connected into bunches by threads in the surface of an ancient soil from South Africa. They have been named Diskagma buttonii, meaning “disc-shaped fragments of Andy Button,” but it is unsure what the fossils were, the authors say.

“They certainly were not plants or animals, but something rather more simple,” said Retallack, professor of geological sciences and co-director of paleontological collections at the UO’s Museum of Natural and Cultural History. The fossils, he added, most resemble modern soil organisms called Geosiphon, a fungus with a central cavity filled with symbiotic cyanobacteria.

“There is independent evidence for cyanobacteria, but not fungi, of the same geological age, and these new fossils set a new and earlier benchmark for the greening of the land,” he said. “This gains added significance because fossil soils hosting the fossils have long been taken as evidence for a marked rise in the amount of oxygen in the atmosphere at about 2.4 billion to 2.2 billion years ago, widely called the Great Oxidation Event.”

By modern standards, in which Earth’s air is now 21 percent oxygen, this early rise was modest, to about 5 percent oxygen, but it represented a rise from vanishingly low oxygen levels earlier in geological time. …

Read the whole article

The Fibonacci spiral applied

July 22, 2013

Mathematics is wonderful but numbers are transcendental.

fibonacci spiral

From twistedswifter

The Fibonacci Series – 0, 1, 1, 2, 3, 5, 8, 13, 21, 34, 55, 89, 144, ….

An approximation of the golden spiral created by drawing circular arcs connecting the opposite corners of squares in the Fibonacci tiling; this one uses squares of sizes 1, 1, 2, 3, 5, 8, 13, 21, and 34.

File:Fibonacci spiral 34.svg

Approximating the Golden Spiral: Wikipedia

Female X chromosome contributes to male sperm production

July 22, 2013

Human females have two of the same kind of sex chromosome (XX) while males have two distinct sex chromosomes (XY).  Now new research indicates that the X chromosome may contribute heavily to sperm production in males — which sounds vaguely incestuous!!

But the news that females have always controlled and do control sperm production in males will not come as any great surprise to any teenager.

Jacob L Mueller, Helen Skaletsky, Laura G Brown, Sara Zaghlul, Susan Rock, Tina Graves, Katherine Auger, Wesley C Warren, Richard K Wilson and David C Page. Independent specialization of the human and mouse X chromosomes for the male germ line. Nature Genetics, 2013; DOI:10.1038/ng.2705

We compared the human and mouse X chromosomes to systematically test Ohno’s law, which states that the gene content of X chromosomes is conserved across placental mammals. First, we improved the accuracy of the human X-chromosome reference sequence through single-haplotype sequencing of ampliconic regions. The new sequence closed gaps in the reference sequence, corrected previously misassembled regions and identified new palindromic amplicons. Our subsequent analysis led us to conclude that the evolution of human and mouse X chromosomes was bimodal. In accord with Ohno’s law, 94–95% of X-linked single-copy genes are shared by humans and mice; most are expressed in both sexes. Notably, most X-ampliconic genes are exceptions to Ohno’s law: only 31% of human and 22% of mouse X-ampliconic genes had orthologs in the other species. X-ampliconic genes are expressed predominantly in testicular germ cells, and many were independently acquired since divergence from the common ancestor of humans and mice, specializing portions of their X chromosomes for sperm production.

PhysOrg writes:

Painstaking new analysis of the genetic sequence of the X chromosome—long perceived as the “female” counterpart to the male-associated Y chromosome—reveals that large portions of the X have evolved to play a specialized role in sperm production.

This surprising finding, reported by Whitehead Institute scientists in a paper published online this week in the journal Nature Genetics, is paired with another unexpected outcome: despite its reputation as the most stable chromosome of the genome, the X has actually been undergoing relatively swift change. Taken together, these results suggest that it’s time to reexamine the biological and medical importance of the X chromosome.

“We view this as the double life of the X chromosome,” says Whitehead Institute Director David Page, whose lab conducted this latest research.

“The X is the most famous, most intensely studied chromosome in all of . And the story of the X has been the story of X-linked recessive diseases, such as , , and Duchenne’s muscular dystrophy,” Page adds. “But there’s another side to the X, a side that is rapidly evolving and seems to be attuned to the reproductive needs of males.”
Read more at: http://phys.org/news/2013-07-sex-chromosome-shocker-female-key.html#jCp

 

Fun and games at the US Senate hearing on Global Warming

July 21, 2013

A US Senate hearing has just been held under the Chairmanship of Senator Barbara Boxer “to focus on Climate Change and the serious threat it poses to our nation”.

(As an aside – I wonder if the proponents of global warming are so nervous and uncertain about their own creed that they need to use “Climate Change” as a euphemism. If they mean “global warming” why don’t they just say “global warming”? Or could they be just preparing their own fall-back positions in case “global warming” turns out to be “global cooling”?).

But if the good Senator’s hope was that the case for global warming (aka Climate Change) was going to be established beyond all reasonable doubt then it seems the hearings have spectacularly backfired.

From WUWT:

Quite a performance yesterday. Steve Milloy is calling it the “Zapruder film” implying it was the day the AGW agenda got shot down. While that might not be a good choice of words, you have to admit they did a fantastic job of shooting down some of the ridiculous claims made by panelists prior to them. While this may not be a Zapruder moment, I’d say that it represented a major turning point.

…..

Video link and links to PDF of testimonies follow.

Here is the video link, in full HD:

http://www.senate.gov/isvp/?type=live&comm=epw&filename=epw071813

Dr. Spencer writes about his experience here and flips the title back at them:

http://www.drroyspencer.com/2013/07/senate-epw-hearing-climate-change-its-happened-before/

The PDF’s of each person’s testimony can be accessed by click on their names below:
Panel 1

Dr. Heidi Cullen
Chief Climatologist
Climate Central
Mr. Frank Nutter
President
Reinsurance Association of America
Mr. KC Golden
Policy Director
Climate Solutions
Ms. Diana Furchtgott-Roth
Senior Fellow
Manhattan Institute for Policy Research
Dr. Robert P. Murphy
Senior Economist
Institute for Energy Research

Panel 2

Dr. Jennifer Francis
Research Professor
Institute of Marine and Coastal Sciences, Rutgers University
Dr. Scott Doney
Director, Ocean and Climate Change Institute
Woods Hole Oceanographic Institution
Dr. Margaret Leinin
Executive Director, Harbor Branch Oceanographic Institute
Florida Atlantic University
Dr. Roger Pielke, Jr.
Professor, Center for Science and Technology Policy Research
University of Colorado
Dr. Roy Spencer
Principal Research Scientist IV
University of Alabama, Huntsville

Noted in passing 21st July 2013

July 21, 2013
map projections galore

Map Projections Galore

More on cartography and map projections.

The linguistic forensics which unmasked JK Rowling as the mystery author Robert Galbraith.

The drop of tar pitch finally fell after 69 years.

Singing in unison in a choir leads to heart beats being synchronised.

The Indian monsoon is almost half-over and rainfall is running 16% above the long term average. In spite of the floods in Uttrakhand this monsoon will probably be classified as a “good” monsoon.

A Viking trading post,  Steinkjer, mentioned in the Norse sagas and dating from 1000 years ago has probably been identified.

The evidence is mounting that there was a pre-Toba expansion Out of Africa and into Asia around 90-100,000 years ago followed by another post-Toba expansion which then went all the way to Australia. The second wave would have mixed with the first wave survivors of the Toba eruption who were probably the first AMH to intermingle with the Denisovans.

The shale gas bonanza continues in the UK and the advantages are being pushed hard even by Bjorn Lomborg.

Great Barrier Reef bombed by US jets

July 21, 2013

US jets on a training exercise – said to have gone wrong – have dropped  four 500lb  bombs on the Great Barrier Reef Marine Park. The bombs are said to have been unarmed and did not explode – apparently.

BBC: US fighter jets dropped inert bombs on the Great Barrier Reef off Australia’s coast during a training exercise that went wrong, it has emerged. The two planes jettisoned four bombs in more than 50m (165 ft) of water, away from coral, to minimise damage to the World Heritage Site, the US navy said.

The jets had intended to drop at a bombing range on a nearby island, but Tuesday’s mission was aborted. The AV-8B Harriers were low on fuel and could not land loaded, the navy added. The emergency happened during the training exercise Talisman Saber, involving US and Australian military personnel. The two jets had been instructed to target the bombing range on Townshend Island. However, the mission was aborted when hazards were reported in the area.

The planes then dropped the bombs in the marine park off the coast of Queensland. None of the devices exploded.

blog post photo

King of the Coral Reef

The Reef put up no resistance and is expected to surrender shortly, The worlds largest coral reef is known to harbour many dangerous species. It is uncertain if any are affiliated to Al Qaeda. The King of the Coral Reef was unavailable for comment.

The animals of the Great Barrier Reef include some 1500 species of marine fish, 360 species of hard corals, between 5000 and 8000 species of mollusks, 600 species of echinoderms, 17 species of sea snakes, 1500 species of sponges, 30 species of whales and dolphins, 6 species of marine turtles, 22 species of seabirds and 32 species of shorebirds which breed on the reef’s many small islands.

On birth rates, abortions and “eugenics by default”

July 20, 2013

Selective breeding works.

Humans have applied it – and very successfully – for plants and animals since antiquity.

There is nothing “wrong” conceptually with eugenics for the selective breeding of humans. But the Nazis – and not only the Nazis – brought all of eugenics into disrepute by the manner in which they tried to apply the concept.  Because of the Nazis and the coercive treatment of some minorities in Europe and of the Aborigines in Australia where forced sterilisation, forced abortions, genocide, euthanasia and mass murder were used to try and control the traits of future generations, eugenics has come to be inextricably associated with the methods used. Even in more recent times genocide, mass rapes and mass murder have been evident even if not openly for the purpose of controlling the genetic characteristics of the survivors.

I note that evolution by “natural selection” does not intentionally select for any particular traits. Surviving traits are due to the deselection of individuals who have not the wherewithal to survive until reproduction. Natural Selection in that sense is not pro-active and evolution is merely the result of changing environments which causes individuals of a species who cannot cope with the change to perish. Evolution has no direction of its own and is just the result of who survives an environmental change. It is not not some great force which “selects” or  leads a species into a desired future. Species fail when the available spread of traits and characteristics among the existing individuals of that species is not sufficient to generate some individuals who can survive the environmental change. Natural Selection is therefore not an intentional selection process but represents the survivors of change. Of course, not all traits have a direct influence on survival. All “collateral” traits are carried along – coincidentally and unintentionally –  with those traits which do actually help survival in any particular environment. But as conditions change what was once a collateral trait may become one which assists in survival.

As breeding techniques go, “Natural Selection” relies on a wide variation of traits throwing up viable individuals able to cope no matter how the environment changes, while “Artificial Selection” chooses particular traits to promote but runs the risk of unwanted collateral traits showing up (as with some bulldogs unable to breathe or with the development of killer bees). Natural selection is the shot-gun to the rifle of artificial selection. The shot gun usually succeeds to hit the target but may not provide a “kill”. But the rifle usually kills but it could easily miss or even kill the wrong target!

Of all the babies conceived today about 1% are conceived by “artificial” means (IVF or surrogacy) and include a measure of genetic selection. Even the other 99% include a measure of partner selection and – though very indirectly – a small measure of genetic selection. A significant portion (perhaps around 20%?) are through “arranged” marriages where some due diligence accompanies the “arrangement”. Such due diligence tends to focus on economic and social checks but does inherently contain some “genetic selection” (for example by excluding partners with histories of mental or other illnesses in their families). If eugenics was only about deliberate breeding programs seeking particular traits then we would not be very far down the eugenics road. But more importantly around 20-25% of babies conceived are aborted and represent a genetic deselection. As a result, a form of “eugenics by default” is already being applied today.

(The rights and wrongs of abortion is another discussion which – in my opinion – is both needless and tainted. Abortion, I think, is entirely a matter for the pregnant female and her medical advisors. I cannot see how anybody else – male or female – can presume to impose the having or not having of an abortion on any pregnant person. Even the male sperm donor does not, I think,  warrant any decisive role in what another person should or should not do. No society requires that a female should get its approval for conceiving or having a child (with the exception of China’s one-child policy). Why then should not having a child require such approval? While society may justifiably seek to impose rules about infanticide, abortion – by any definition – is not the same as infanticide. Until the umbilical is severed, a foetus is essentially parasitic, totally dependent upon its host- mother and not – in my way of thinking – an independent entity. I cannot and do not have much respect for the Pope or other religious mullahs who would determine if I should shave or not or if a woman may or may not have an abortion).

Consider our species as we breed today.

In general the parents of children being conceived today share a geographical habitat. Apart from the necessity – so far – of the parents having to meet physically, it is geographical proximity which I think has dominated throughout history. Victors of war, conquerors, immigrants, emigres and wanderers have all succumbed to the lures of the local population within a few generations. In consequence, partners often share similar social and religious and ethnic backgrounds. But the geographical proximity takes precedence. Apart from isolated instances (Ancient Greece, the Egypt of the Pharaohs, the persecution of the Roma, European Royalty, Nazi Germany and the caste-system on the Indian sub-continent), selective breeding solely for promoting or destroying specific genetic traits has never been the primary goal of child-bearing. Even restrictive tribes where marrying outside the “community” (some Jews and Parsis for example) is discouraged have been and still are more concerned about not diluting inherited wealth than any desire to promote specific genetic traits.

But it is my contention that we are in fact – directly and indirectly –  exercising an increasing amount of genetic control in the selection and deselection of our offspring . So much so that we already have “eugenics by default” being applied to a significant degree in the children being born today.

Currently the global birth rate is around 20 per 1000 of population (2%), having been around 37 in 1950 and projected to reduce to around 14 (1.4%) by 2050.

Crude birth rate actual and forecast UN data

Crude birth rate actual and forecast: UN data

Of these the number conceived by artificial means (IVF and surrogacy) is probably around 1% (around 0.2 births per 1000 of population). For example for around 2% of live births in the UK in 2010 , conception was by IVF. In Europe this is probably around 1.5% and worldwide it is still less than 1%. But this number is increasing and could more than double by 2050 as IVF spreads into Asia and Africa. By 2050 it could well be that for around 3% of all live births, conception has been by “artificial” means and that there will be a much greater degree of genetic screening applied.

Abortion rates increased sharply after the 1950’s as the medical procedures developed to make this a routine procedure. Done properly it is a relatively risk-free procedure though there are still many “unsafe” abortions in the developing and religiously repressive countries. Since 1995 abortion rates worldwide have actually decreased from about 35 per 1000 women of child-bearing age to about 28 today.  These numbers would indicate that the number of abortions taking place today is around 20-25% of the number of live births.

http://www.economist.com/blogs/graphicdetail/2012/01/daily-chart-7

Global abortion rates: graphic Economist

Global abortion rates: graphic Economist

So of every 100 babies conceived around 25% are deselected by abortion and 75 proceed to birth. Only 1 of these 75 would have been conceived by “artificial” means. The genetic deselection by abortion is both direct and indirect. The detection of genetic defects in the foetus often leads to abortion and this proportion can be expected to increase as techniques for the early identification of defects or the propensity for developing a debilitating disease are perfected. In many cases abortion is to safeguard the health of the mother and does not – at least directly – involve any deselection for genetic reasons. In many countries – especially India – abortions are often carried out to avoid a girl child and this is a direct genetic deselection. It seems to apply particularly for a first child. The majority of abortions today are probably for convenience. But if the “maternal instinct” is in any way a genetic charateristic, then even such abortions would tend to be deselection in favour of those who do have the instinct.

The trends I think are fairly clear. The proportion of “artificial births” is increasing and the element of genetic selection by screening for desired charateristics in such cases is on the increase. The number of abortions after conception would seem to be on its way to some “stable” level of perhaps 25% of all conceptions. The genetic content of the decision to abort however is also increasing and it is likely that the frequency of births where genetic disorders exist or where the propensity for debilitating disease is high will decrease sharply as genetic screening techniques develop further.

It is still a long way off to humans breeding for specific charateristics but even what is being practised now is the start of eugenics in all but name. And it is not difficult to imagine that eugenics – without any hint of coercion – but where parents or the mothers-to-be select for certain characteristics or deselect (by abortion) to avoid others in their children-to-be will be de rigueur.


 

Chimpanzees and orangutans have long term memories too

July 19, 2013

image The Telegraph

Interesting work in a new paper is published in Current Biology. It supports my view that life is a continuum from simple to complex with no place for – or any need to invoke – a “soul”. At what point the brain of a species is large enough and complex enough not only to be able to “save” memories but also to then access these data at a later time is also unknown. I have little doubt from the  dogs and cats that I have known that they can “remember” people and behaviour from many years before  – even if they are often  supposed to live only in the “now”. At what point in this continuum “self-awareness” emerges is not known but I suspect that it depends on the definition of “self-awareness” and some level of self-awareness lies very close to the “simple” end of the scale of life.

(Certainly the mosquito which got trapped in my study yesterday was not just “self-aware”, it was also maliciously aware of me. If it had a soul it has now been consigned to mosquito hell!!)

This work shows that chimpanzees and orangutans have the ability to “remember events that happened two weeks or three years ago, but also that they can remember them even when they are not expecting to have to recall those events at a later time” 

Gema Martin-Ordas, Dorthe Berntsen, Josep Call. Memory for Distant Past Events in Chimpanzees and Orangutans. Current Biology, 2013; DOI: 10.1016/j.cub.2013.06.017

Highlights

  • First study addressing unexpected and cued recall of both general and unique events
  • Chimpanzees and orangutans recalled events that happened weeks and years earlier
  • Subjects also showed evidence of binding
  • Chimpanzees and orangutans share this form of autobiographical memory with humans

Summary

Determining the memory systems that support nonhuman animals’ capacity to remember distant past events is currently the focus an intense research effort and a lively debate. Comparative psychology has largely adopted Tulving’s framework by focusing on whether animals remember what-where-when something happened (i.e., episodic-like memory). However, apes have also been reported to recall other episodic components after single-trial exposures. Using a new experimental paradigm we show that chimpanzees and orangutans recalled a tool-finding event that happened four times 3 years earlier (experiment 1) and a tool-finding unique event that happened once 2 weeks earlier (experiment 2). Subjects were able to distinguish these events from other tool-finding events, which indicates binding of relevant temporal-spatial components. Like in human involuntary autobiographical memory, a cued, associative retrieval process triggered apes’ memories: when presented with a particular setup, subjects instantaneously remembered not only where to search for the tools (experiment 1), but also the location of the tool seen only once (experiment 2). The complex nature of the events retrieved, the unexpected and fast retrieval, the long retention intervals involved, and the detection of binding strongly suggest that chimpanzees and orangutans’ memories for past events mirror some of the features of human autobiographical memory.

From Science Daily:

…. “Our data and other emerging evidence keep challenging the idea of non-human animals being stuck in time,” says Gema Martin-Ordas of Aarhus University in Denmark. “We show not only that chimpanzees and orangutans remember events that happened two weeks or three years ago, but also that they can remember them even when they are not expecting to have to recall those events at a later time.” ….. 

“I was surprised to find out not only that they remembered the event that took place three years ago, but also that they did it so fast!” Martin-Ordas says. “On average it took them five seconds to go and find the tools. Again this is very telling because it shows that they were not just walking around the rooms and suddenly saw the boxes and searched for the tools inside them. More probably, it was the recalled event that enabled them to find the tools directly.”